Kevin,
I have a 1998 Manitou that I just put a new stereo and speakers in. It sounds great!
I wired it just like the stereo that it replaced it with. It has a red wire, a yellow wire and another positive called “Illumination wire” that are all three hooked up to power. One is direct and the other two are through the switch. 
Anytime the boat is running and I have the stereo on, it shuts off anytime I push any button that uses electricity. If you hit the trim switch, the stereo shuts off. If you turn on the accessory switch, it turns the stereo off.
The weird thing is if you touch the trim switch, sometimes the stereo will turn back on by itself in about 20 seconds. Sometimes it won’t. The blower and the horn are the only two switches that won’t make the stereo turn off.
Any ideas?
Randy
Randy,
Your new stereo is more powerful than the old. It draws more current.
As you draw more current through a wire, more of the power is lost as the wire warms up. This power loss is observed by a lower voltage at the end of the wire.
The stereo may work fine when only the stereo is on, but as soon as you add the current of another device, the voltage drops too low and the stereo shuts off. Most other devices on you boat just operate slower or dimmer and you will not notice.
Solution:
Increase the size of the power feed and ground for your stereo. Make sure you have circuit protection on the power feed as close as possible to the battery.
Hope this helps,
Kevin